PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g931940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 344aa MW: 38446.1 Da PI: 6.2005

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g931940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	75	125	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Pd.00g931940.m01 75 RHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 125 579********************************************9877 PP
2	START	41.6	3.2e-14	239	316	2	69
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddk 69 + ++a++el k+a+a+ep+Wv+s+ e++n+de++++f + +s+ea+r++gvv+ ++++lv++++d+ Pd.00g931940.m01 239 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEIPgngrpkRSIEASRETGVVFVDMPRLVQSFMDVV 316 56789*********************************9988899**************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGEAAAA SREVEEGDEG SGGAGSVRRR 60 EDTAEISSEN SGPARHTTEQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR 120 RTQIKAIQER HENSLLKGEM EKLRDENKAM REQINKSCCP NCGTATTSRD ASLTTEEQQL 180 RIENARLKSE VEKLRAALVK NPPGTSSPSC SSGHDQENRS SLDFYTGIFG LEKSRIMEIV 240 NQAMEELKKM ATAGEPLWVR SVETGREILN YDEYIKEFNI EIPGNGRPKR SIEASRETGV 300 VFVDMPRLVQ SFMDVVHTST SCMHEAEILY HAKSYCLVGT RIAS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGEAAAA SREVEEGDEG SGGAGSVRRR  60
EDTAEISSEN SGPARHTTEQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR  120
RTQIKAIQER HENSLLKGEM EKLRDENKAM REQINKSCCP NCGTATTSRD ASLTTEEQQL  180
RIENARLKSE VEKLRAALVK NPPGTSSPSC SSGHDQENRS SLDFYTGIFG LEKSRIMEIV  240
NQAMEELKKM ATAGEPLWVR SVETGREILN YDEYIKEFNI EIPGNGRPKR SIEASRETGV  300
VFVDMPRLVQ SFMDVVHTST SCMHEAEILY HAKSYCLVGT RIAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	1e-113	HD-ZIP family protein