PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g930630.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 709aa MW: 78879.8 Da PI: 6.5127

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g930630.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.1e-23	73	174	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F + Pd.00g930630.m01 73 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL--RG 162 99**************************963.3445679********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++++r+ Pd.00g930630.m01 163 ENGELRLGIRRA 174 99999**996 PP
2	Auxin_resp	119.9	1.9e-39	199	280	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G+Rfkm+f+ +ds+err+sG+v+g+sdldp+ WpnSkWr+L Pd.00g930630.m01 199 VANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGTRFKMRFDRDDSPERRCSGVVTGISDLDPYGWPNSKWRCL 280 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MEMPTFDLQP QIFCKVVNVQ LLANKENDEV YTHVTLLPQP ELVGTNLDGK ELEELGVDEG 60 DGGSPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKQQRPS QELVAKDLHG 120 VEWRFRHIYR GQPRRHLLTT GWSIFISQKN LVSGDAVLFL RGENGELRLG IRRAVRPRNG 180 LPDSIVGNQN SYPSVLSHVA NAISTKSMFH VFYSPRASHA EFVIPYQKYV RSIANPVTTG 240 TRFKMRFDRD DSPERRCSGV VTGISDLDPY GWPNSKWRCL MVRWDEDIGN DHQERVSPWE 300 IDPSVSLPPL SIQSSPRLMK KLRTSLQATP PNNSITAGGG GFMDFEESVK SSKVLQGQEN 360 IGFISPLYGC DTVNRPQDFE MQAPAHPSLA SNATQKATIG ELMRARHSTY TGFAESDRFP 420 KVLQGQEICP LRSLTGKANF TLGDWESNLG CTSFNIYQAP KPNFFSLASE SLPNIYFPYG 480 DIRRAGQDPV MCSNATNLPR EGMKINPYSM QMGVTRNEVG RPNKPSEHKP QESSSAPPTL 540 VPNPRNPNDE DFNGTVTGCK LFGFSLTGEN PTPNSQSSGK RSCTKVHKQG SLVGRAIDLS 600 KLNGYGDLLS ELERLFSMEG LLRDSDKGWR ILYTDSENDV MVVGDDPWHE FCNVVSKIHI 660 YTQEEVEKMT IGMISDDTQS CLEQAPVLLE MSKSSSVSQP DSSPTVIRV

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MEMPTFDLQP QIFCKVVNVQ LLANKENDEV YTHVTLLPQP ELVGTNLDGK ELEELGVDEG  60
DGGSPTKSTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKQQRPS QELVAKDLHG  120
VEWRFRHIYR GQPRRHLLTT GWSIFISQKN LVSGDAVLFL RGENGELRLG IRRAVRPRNG  180
LPDSIVGNQN SYPSVLSHVA NAISTKSMFH VFYSPRASHA EFVIPYQKYV RSIANPVTTG  240
TRFKMRFDRD DSPERRCSGV VTGISDLDPY GWPNSKWRCL MVRWDEDIGN DHQERVSPWE  300
IDPSVSLPPL SIQSSPRLMK KLRTSLQATP PNNSITAGGG GFMDFEESVK SSKVLQGQEN  360
IGFISPLYGC DTVNRPQDFE MQAPAHPSLA SNATQKATIG ELMRARHSTY TGFAESDRFP  420
KVLQGQEICP LRSLTGKANF TLGDWESNLG CTSFNIYQAP KPNFFSLASE SLPNIYFPYG  480
DIRRAGQDPV MCSNATNLPR EGMKINPYSM QMGVTRNEVG RPNKPSEHKP QESSSAPPTL  540
VPNPRNPNDE DFNGTVTGCK LFGFSLTGEN PTPNSQSSGK RSCTKVHKQG SLVGRAIDLS  600
KLNGYGDLLS ELERLFSMEG LLRDSDKGWR ILYTDSENDV MVVGDDPWHE FCNVVSKIHI  660
YTQEEVEKMT IGMISDDTQS CLEQAPVLLE MSKSSSVSQP DSSPTVIRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein