PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g928270.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 488aa    MW: 52637.4 Da    PI: 6.9655
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g928270.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36672312134
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 
                        g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                             
  Pd.00g928270.m01  67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascehgfdsaeve 159
                       689*************************************************************88887777776665555555532222222 PP

               TCP  66 ..ssssasec...eaesssssasnsssg.............kaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                         +          +             +              + +++a+s++s++s+ s l+l++      r kar+rarer ++++ +++
  Pd.00g928270.m01 160 leG------HghgD-------------PnyhhhqnqnqgqhLSLSKSACSSNSETSKGSGLSLSQseirVNRVKARERARERAAKDKEKES 231
                       220......02222.............02222222223333444555556666666666666666423366699****9998777766654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDQSCLDL KRAATADAGN RLRGWHHSRI  60
IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA  120
ADAIAELPSL NNSFPDTPKQ LSDEKRASCE HGFDSAEVEL EGHGHGDPNY HHHQNQNQGQ  180
HLSLSKSACS SNSETSKGSG LSLSQSEIRV NRVKARERAR ERAAKDKEKE SNESASHIAH  240
HRQQNSSNLN NSISQSASFT ELLTGGIGTN SSNNNNSPTA AAHQQQNHGG EPILFHKAAA  300
AGGGGPMDYF SSGLLGLSSS TRTHHSSGFS SQIQLGMNSI PQTMSVVSPF SVSGDHHHNH  360
NPELQHFSFV PDHLIPVTTS SQPGNGGDYN LNFSISSSGG LAGFNRGTLQ SNSSSPSLLP  420
HHLQRFSPID GSSNLGLIAA CNIPTATEAG IQTTREKQRT DLDHDQSLAA HLSFFLESEA  480
KEAVATCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.14e-44TCP family protein