PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g928240.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 489aa MW: 52693.4 Da PI: 6.987 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.3 | 2e-36 | 67 | 231 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ Pd.00g928240.m01 67 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnsfpdtpkqlsdekrascghgfdsaeve 159 689*************************************************************88888777777666666666533322222 PP TCP 66 ..ssssasec.......eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 + +++++++++ + + +++a+s++s++s+ s l+l++ r kar+rarer ++++ +++ Pd.00g928240.m01 160 leG------HghgdpnyHHHQNQNQGQ----HLSLSKSACSSNSETSKGSGLSLSQseirVNRVKARERARERAAKDKEKES 231 220......022211112233333333....3444555555666666666666666423366699****9998777766654 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence |
MEVEEIQAQA CKFPRIGNGS SRATNPAADD EDQDQSYLDL KRAATADAGN RLRGWHHSRI 60 IRVSRASGGK DRHSKVWTSK GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA 120 ADAIAELPSL NNSFPDTPKQ LSDEKRASCG HGFDSAEVEL EGHGHGDPNY HHHQNQNQGQ 180 HLSLSKSACS SNSETSKGSG LSLSQSEIRV NRVKARERAR ERAAKDKEKE SNESASHIAH 240 HHQQNSSNLN NSISQSASFT ELLTGGIGTN SSNNNNSPTA AAHQQQNHGG EPILFHKAAA 300 AGGGGPMDYF SSGLLGLSSS TRTHHSSGFS SQIQLGMNSI PQTMSVVSPF SVSGDHHHNH 360 NPELQHFSFV PDHLIPVTTS SQPGNGGDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLL 420 PHHLQRFSPI DGSSNLGLIA ACNIPTATEA GIQTTREKQR TDLDHDQSLA AHLSFFLESE 480 AKEAVATCE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.1 | 3e-44 | TCP family protein |