PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g925590.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 275aa MW: 30051.1 Da PI: 7.507 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.4 | 7e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+s qvtfskRr g++KKA+EL++LC+ae+a+i+fs+ k++ + Pd.00g925590.m01 16 MENDSHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFCF 62 69**************************************9998766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence |
MVKKTRGRQK VDMVKMENDS HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF 60 CFGHPGIETL LDRFEGTVPR QILNSETQKL IDGYRIAGLC EITDELTRVL EVLEEERKWG 120 DVLTQSMKAK QEGKWWQRPV EEMELDQLEA LKASLLELKS KVADEAKLRL SAAESANLAH 180 NPNFCVGSSS SSAAAQNANP AHNNFFVGSS SSRAVAGPSG LQGLVNPDIN NVAFNFNGND 240 HVMQAPHQPN NVGFNGNPNA MPLSGWNPNL GGGFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-45 | M-type_MADS family protein |