PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g918110.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 563aa MW: 58543.3 Da PI: 7.6091

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g918110.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g918110.m01 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.6	4.7e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Pd.00g918110.m01 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPPKK KRNLPGMPDP EAEVIALSPT 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN 120 PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KAQTLAVDGS DGNQNLNNHS PNPNAKGVVA SPPPPPLTPS 240 NTVVSPALSI QSSELPENPI GLSPPTPATT CLTTTAISTT TTTTTTTSTG NCNNGSSVFA 300 SIFAPSTASA LIAQPPQTSS PSSFSNQVST LGRPDGSTTV PTVSSINEPT SLSLSTSLYL 360 SSNGSSLFPT PEPQDHRHYA QPAVMSATAL LQKAAQMGAA ASNASLLRGF GLATSSSSPS 420 QENSTALQWN KPESGGGTTQ MAAGVGLELL STANAAHLTD LMMGPPSQFG GQPMTRDLLG 480 LSIGVGSSGS GASTGGLSAL LNSFGGGGSG FDVAAAAAAA YGGGAGSSQR ESWEGKESDS 540 GQLAGAPAFE DSPSEVALCV LCC

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPPKK KRNLPGMPDP EAEVIALSPT  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN  120
PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KAQTLAVDGS DGNQNLNNHS PNPNAKGVVA SPPPPPLTPS  240
NTVVSPALSI QSSELPENPI GLSPPTPATT CLTTTAISTT TTTTTTTSTG NCNNGSSVFA  300
SIFAPSTASA LIAQPPQTSS PSSFSNQVST LGRPDGSTTV PTVSSINEPT SLSLSTSLYL  360
SSNGSSLFPT PEPQDHRHYA QPAVMSATAL LQKAAQMGAA ASNASLLRGF GLATSSSSPS  420
QENSTALQWN KPESGGGTTQ MAAGVGLELL STANAAHLTD LMMGPPSQFG GQPMTRDLLG  480
LSIGVGSSGS GASTGGLSAL LNSFGGGGSG FDVAAAAAAA YGGGAGSSQR ESWEGKESDS  540
GQLAGAPAFE DSPSEVALCV LCC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein