PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g914890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 508aa MW: 56897.6 Da PI: 8.5816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g914890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	6.1e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Pd.00g914890.m01 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	15.2	6.1e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Pd.00g914890.m01 132 WVCDKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV AKKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HSNPTEYTKL 240 ILTSTSPPAH PDHLQPTLVS NKALYNLDLQ LATTSNNIPI NEVSSVSSKR EENHSTQLQL 300 SIGSCDFGGG ELHQNKNVEH SNFMITNRNY SPRDKEMRER ESSSTTTNHH EHDDDQKPKP 360 SAGISISAAS SRLKEEAREQ LRLAMAEKAY AEEARRQAEH QIELAEKEFA NAKRIRQQAQ 420 AELDKAQALK EQAIKKVNST ILQITCHACK QQFIQADHPT TRSRATPTPT HEAINHSLVL 480 SYMSSAITSE GDPLDNNNIR PHHAKPAN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV AKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HSNPTEYTKL  240
ILTSTSPPAH PDHLQPTLVS NKALYNLDLQ LATTSNNIPI NEVSSVSSKR EENHSTQLQL  300
SIGSCDFGGG ELHQNKNVEH SNFMITNRNY SPRDKEMRER ESSSTTTNHH EHDDDQKPKP  360
SAGISISAAS SRLKEEAREQ LRLAMAEKAY AEEARRQAEH QIELAEKEFA NAKRIRQQAQ  420
AELDKAQALK EQAIKKVNST ILQITCHACK QQFIQADHPT TRSRATPTPT HEAINHSLVL  480
SYMSSAITSE GDPLDNNNIR PHHAKPAN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-113	C2H2 family protein