PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g905200.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 723aa MW: 80333.3 Da PI: 6.1752 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.2 | 8.8e-21 | 75 | 125 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Pd.00g905200.m01 75 RHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 125 579********************************************9877 PP | |||||||
2 | START | 233.6 | 5.3e-73 | 239 | 462 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 + ++a++el k+a+a+ep+Wv+s+ e++n+de++++f + +s+ea+r++gvv+ ++++lv++++d++ qW+e+++ ka+ Pd.00g905200.m01 239 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEIPgngrpkRSIEASRETGVVFVDMPRLVQSFMDVN-QWKEMFPcmisKAA 330 56789***********************************9988899*******************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t++vis+g ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+w Pd.00g905200.m01 331 TVDVISNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIW 422 **************************************************************98.9*************************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh ++++++++ ++r +v+sgla+ga++wvatlq qce+ Pd.00g905200.m01 423 VEHLECQKSTIQTMYRTIVNSGLAFGARHWVATLQLQCER 462 **************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence |
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGEAAAA SREVEEGDEG SGGAGSVRRR 60 EDTAEISSEN SGPARHTTEQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR 120 RTQIKAIQER HENSLLKGEM EKLRDENKAM REQINKSCCP NCGTATTSRD ASLTTEEQQL 180 RIENARLKSE VEKLRAALVK NPPGTSSPSC SSGHDQENRS SLDFYTGIFG LEKSRIMEIV 240 NQAMEELKKM ATAGEPLWVR SVETGREILN YDEYIKEFNI EIPGNGRPKR SIEASRETGV 300 VFVDMPRLVQ SFMDVNQWKE MFPCMISKAA TVDVISNGEG DNRNGAVQLM FAELQMLTPL 360 VPTREVYFVR CCKQLSAEQW AIVDVSIDKV EDNIDASLVK CRKRPSGCII EDKSNGHCKV 420 IWVEHLECQK STIQTMYRTI VNSGLAFGAR HWVATLQLQC ERLVFFMATN VPMKDSTGVA 480 TLAGRKSILK LAQRMTWSFC RAIGASSYHT WTKISSKTGD DIRIASRKNL NDPGEPLGVI 540 LCAVSSVWLP VCPYVLFDFL RDETRRNEWD IMLNGGPAQT IANLSKGQDR GNAVTIQTMK 600 SKENSMWILQ DTCINSYESM VVYAPVDITG MQSVMTGCDA SNIAILPSGF SILPDGLESR 660 PMVITSKQED RSSEGGTLLT AAFQILTNSS PTAKLTMESV ESVNTLISCT LRNIKTSLQC 720 EDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |