PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g897840.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 229aa MW: 25815.7 Da PI: 4.3987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g897840.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.1	4.2e-31	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l++lp ++r a ++++eA+ara dP yG+v+ il+lq+q+ + +a Pd.00g897840.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGANKMSRILSKLPMSDRAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100 7*******************9998469************************************************************ PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g897840.m01 101 QLDEAHEQL 109 **99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGANKM SRILSKLPMS 60 DRAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN 120 QDQENSNEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNIV 180 NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISSIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-43	LBD family protein