PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g897700.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1557aa MW: 169545 Da PI: 4.7038

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g897700.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	1533	1555	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ Pd.00g897700.m02 1533 QRVCR-FFESGHCKKGASCDYLHP 1555 68899.8889*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1557 aa Download sequence
MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV 60 EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVTEGHGT 120 EDTEIVEELD VAEGHGTEDT EIVEELNVAE GHGTEDTEIV EELSVAEGQV TEETEVGAVD 180 EKDERGLETE KVLSEEGIVA HSAKEAAEKS NVAEVAEETV ISWKDQAEEK TAEVEAEEAE 240 AEAEKVQAVG EQAEAEGEKT EEEVEGDDEA NVTDMVTETD MVEESSKATG KLLSKKKMEE 300 DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC 360 YTCTFSLCKG CTKDALFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY 420 LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL 480 ANSKKRKAKK RLRTRGKGKD SSSPATATGS GGPSADDSTG WGSKELLEFV MHMRNGDKSA 540 LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE 600 DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDRRRKTR KKGDGRGPQS NTDDFAAIDI 660 HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP 720 YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE 780 KALALQAVRV KDWLETEIVR LSHLRDRASE KGRRKELREC VEKLQLLKTP EERQRRLEET 840 LEIHVDPNMD PSYESEEDEE SYIRPTGSGF GRKGREPISP RRAGPSSNDS WSGSRNFSSM 900 NRELSRNMSN KGFFNKAENT SAASEIVNDS WGHGRDRETQ QTNHWEKKQN ISSLETGVRS 960 TQSAVPSESS PAGGSENSVA HLSTGVAQSA VNESEKIWHY KDPSGKVQGP FSMVQLRKWN 1020 HTGYFPANLR VWRNTEKEED SILVTDALTG KFQKDPSFVD SSFPKAQMVH NSHLSPVHSG 1080 KSQGALFQRG TEGQAGGVSW GSQNEINSSS GRGTPQSVEV PKYSSDGWST TNLPSPTPSQ 1140 TPLGGARGQA YESNWSPSPV HPGGSVLGGN GVLQPTAVVT PESALRASGN DRSSSLPGIN 1200 AAPKSENATL LGSTTALRMH GQVTGSAPVL SNASMNQVAD VNNLVSNLQN LVQSVTSRAP 1260 ASDARGWGSG SVPKQEMTAS GPVPGSESQP WGGAPSQRIE PNNAATVPAQ HHTHGYWNNA 1320 PSTNNAPSSM NTGNLAGNFP TSGFSGVPHS DPWRPPVPSN HTYIQPPAQP QAPWGVGVPD 1380 NQSAVPRTGQ ENQNTSWVPM AGNPNVTWGG GPVPGNTNMN WGPPSQGPGW TAPSQGPVPG 1440 NAVTNWVPPG QGPPSVSANP GWAPPGQGPT LGNANPGWSA PNATQNGDRF SNQRDRGSHG 1500 DPGFGGGKPW NRQSSFGSGG GGGGSSRPPF RGQRVCRFFE SGHCKKGASC DYLHPDH

Sequence ? help Back to Top

Protein Sequence Length: 1557 aa Download sequence

MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEPQCM SESLPEPELK PETEGFGLGV  60
EGESDAVPTE DTEIVEELNG AEGHGTEDTE IVEELNVTEG HGTEDTEIVE ELNVTEGHGT  120
EDTEIVEELD VAEGHGTEDT EIVEELNVAE GHGTEDTEIV EELSVAEGQV TEETEVGAVD  180
EKDERGLETE KVLSEEGIVA HSAKEAAEKS NVAEVAEETV ISWKDQAEEK TAEVEAEEAE  240
AEAEKVQAVG EQAEAEGEKT EEEVEGDDEA NVTDMVTETD MVEESSKATG KLLSKKKMEE  300
DVCFICFDGG ELVLCDRRGC PKAYHPSCVN RDEAFFRAKG RWNCGWHLCS NCEKNAHYMC  360
YTCTFSLCKG CTKDALFLCV RGNKGFCETC MKTVMLIEKN EQGNKDTNEV DFDDKTSWEY  420
LFKDYWIDLK ERLSLTVDEL AQAKNPWKGA TGHKQESHDE PYDVNNDEGS ESDNSENLDL  480
ANSKKRKAKK RLRTRGKGKD SSSPATATGS GGPSADDSTG WGSKELLEFV MHMRNGDKSA  540
LSQFDVQALL LEYIKRNKLR DPRRKSQIIC DIRLQNLFGK PRVGHFEMLK LLESHFLVKE  600
DSQADDLQGS VVDTEGNQLE ADGNSDTPAK SSKDRRRKTR KKGDGRGPQS NTDDFAAIDI  660
HNINLIYLKR NLVEDLLDDL DNFGDKVAHS FVRIRISGSG QKQDLYRLVQ VIGTCKAAEP  720
YKVGKRMTDI LLEILNLNKT EIISIDIISN QDFTEDECKR LRQSIKCGLI NRLTVGDVQE  780
KALALQAVRV KDWLETEIVR LSHLRDRASE KGRRKELREC VEKLQLLKTP EERQRRLEET  840
LEIHVDPNMD PSYESEEDEE SYIRPTGSGF GRKGREPISP RRAGPSSNDS WSGSRNFSSM  900
NRELSRNMSN KGFFNKAENT SAASEIVNDS WGHGRDRETQ QTNHWEKKQN ISSLETGVRS  960
TQSAVPSESS PAGGSENSVA HLSTGVAQSA VNESEKIWHY KDPSGKVQGP FSMVQLRKWN  1020
HTGYFPANLR VWRNTEKEED SILVTDALTG KFQKDPSFVD SSFPKAQMVH NSHLSPVHSG  1080
KSQGALFQRG TEGQAGGVSW GSQNEINSSS GRGTPQSVEV PKYSSDGWST TNLPSPTPSQ  1140
TPLGGARGQA YESNWSPSPV HPGGSVLGGN GVLQPTAVVT PESALRASGN DRSSSLPGIN  1200
AAPKSENATL LGSTTALRMH GQVTGSAPVL SNASMNQVAD VNNLVSNLQN LVQSVTSRAP  1260
ASDARGWGSG SVPKQEMTAS GPVPGSESQP WGGAPSQRIE PNNAATVPAQ HHTHGYWNNA  1320
PSTNNAPSSM NTGNLAGNFP TSGFSGVPHS DPWRPPVPSN HTYIQPPAQP QAPWGVGVPD  1380
NQSAVPRTGQ ENQNTSWVPM AGNPNVTWGG GPVPGNTNMN WGPPSQGPGW TAPSQGPVPG  1440
NAVTNWVPPG QGPPSVSANP GWAPPGQGPT LGNANPGWSA PNATQNGDRF SNQRDRGSHG  1500
DPGFGGGKPW NRQSSFGSGG GGGGSSRPPF RGQRVCRFFE SGHCKKGASC DYLHPDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein