PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g897230.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 551aa MW: 62665.8 Da PI: 6.9211

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g897230.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95	7.2e-30	104	189	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea Pd.00g897230.m01 104 RWPRQETLTLLEIRSGLDSKFKETNQKGPLWDEVSRIMgEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 189 8***********************************99**************************98..55667*****85 PP
2	trihelix	54.1	4.2e-17	401	481	1	80
trihelix 1 rWtkqevlaLie.arremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt++ev Lie +r+++e ++++ g+ k++lWee+++km g++rs +Ckekwen++ + ++e +kk++++++ Pd.00g897230.m01 401 RWTEHEVASLIElIRTSLELTIQDcGCFKEGLWEEIAAKMGCLGYRRSVGECKEKWENMSVFPRMTAECNKKHKQDAK-ANM 481 8*********446678888887799*******************************999999999999955544.333 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MASRTQFCTT SQFQEPFSAH GNLTAQPNYQ PMLVPAGGLV DHLHPPHYST IINGCGAAHP 60 PNAAATTSSA AALYGIDLEH GHGWNNNINV GMNAADGGNN MNYRWPRQET LTLLEIRSGL 120 DSKFKETNQK GPLWDEVSRI MGEEHGYQRS GKKCKEKFEN LYKYYKKTKE GKAGRQDGKH 180 YRFFRQLEAI YGDQTSNQSS TYGRLNPRLY HHTTPNDTVN PKNQEVVQDQ KHISCESLSF 240 SNNSTEFDQT SSSENNDDDL SISAIDYFMM NQSMGSLKNE KQSCARPINK KSWKAKVEDF 300 VNSQIGKVIN TQEAWMEKML KSIEHREEER IAQEEEWKKQ QAAKFDREVH EFWAKERAWV 360 ESRDAAIMEA LGTFSRPGIS NHDKDKDDIS KLQIPNDTIN RWTEHEVASL IELIRTSLEL 420 TIQDCGCFKE GLWEEIAAKM GCLGYRRSVG ECKEKWENMS VFPRMTAECN KKHKQDAKAN 480 MYHGQLSCYE GQQEVSKRRP DGMGLQLMDG GLSPSSSNMD VSSSSFHMQF NGGENLWDRY 540 GTVKLSKGKN Q

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MASRTQFCTT SQFQEPFSAH GNLTAQPNYQ PMLVPAGGLV DHLHPPHYST IINGCGAAHP  60
PNAAATTSSA AALYGIDLEH GHGWNNNINV GMNAADGGNN MNYRWPRQET LTLLEIRSGL  120
DSKFKETNQK GPLWDEVSRI MGEEHGYQRS GKKCKEKFEN LYKYYKKTKE GKAGRQDGKH  180
YRFFRQLEAI YGDQTSNQSS TYGRLNPRLY HHTTPNDTVN PKNQEVVQDQ KHISCESLSF  240
SNNSTEFDQT SSSENNDDDL SISAIDYFMM NQSMGSLKNE KQSCARPINK KSWKAKVEDF  300
VNSQIGKVIN TQEAWMEKML KSIEHREEER IAQEEEWKKQ QAAKFDREVH EFWAKERAWV  360
ESRDAAIMEA LGTFSRPGIS NHDKDKDDIS KLQIPNDTIN RWTEHEVASL IELIRTSLEL  420
TIQDCGCFKE GLWEEIAAKM GCLGYRRSVG ECKEKWENMS VFPRMTAECN KKHKQDAKAN  480
MYHGQLSCYE GQQEVSKRRP DGMGLQLMDG GLSPSSSNMD VSSSSFHMQF NGGENLWDRY  540
GTVKLSKGKN Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-86	Trihelix family protein