PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g888940.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 343aa    MW: 37609 Da    PI: 6.4001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g888940.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-07303327730
                       HHHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                       ++ErrRR+++N+++  Lr+++Pk +
  Pd.00g888940.m01 303 MAERRRRKKLNDRLYMLRSVVPKiS 327
                       79********************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MLEGDWYMNN VLNPTHHQDL HSLPNHRQPD IRDIACFSEN TLMLQPMDSS ASCSPSQAFS  60
LDPSPPQHLF PPKSCFSSLL NVVSTNPFDN GFDLGCDSGF LSSFQGNQPS NSSAFLGFTA  120
LNSQSQMGTP ELSSSAEFPT TRLLPAPNND TELDGDFSLT SFQGFDGSGG AQLLNRAKPQ  180
RPLHVFPPVG AHPTLFQKRA ALRQNSGCEG TDKLGNLEIS GPRYGGVLES LERKRKKNVE  240
GEMEEGSMDV SGLNYDSDEF NEYSQVEENV KNAGSNSNAN STVTGVDGDR KGKKKGLPAK  300
NLMAERRRRK KLNDRLYMLR SVVPKISKVG PWLSLNLFLP CSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237RKRKK
2293311KKKGLPAKNLMAERRRRKK
3305312ERRRRKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.11e-55bHLH family protein