PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g884870.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 244aa    MW: 27669.2 Da    PI: 5.763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g884870.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-1372123155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR++iNs ++  r+llP +   ++kKls   +  ++ +YI +Lq
  Pd.00g884870.m01  72 KKLNHNASERDRRKKINSLYSSMRSLLPAD---QAKKLSIPNTISRVLKYIPELQ 123
                       6789**************************...*******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MLALSPPVFS TVGWPSEDPI GYDQNYFYRD SSTDQTAESF LHILPSQLPQ FELDLSTTIS  60
GDNSSGSTVV AKKLNHNASE RDRRKKINSL YSSMRSLLPA DQAKKLSIPN TISRVLKYIP  120
ELQKQVEGLI RKREELLSRA SKQEDVMQEE KDMKSTARSS SLSAVSTYRL SDREVAIQIS  180
TLKTHNNLLS EILLNLEEEG LQVLNASLLE SSGERVFYNL HLQVERSYRL ECENLSEKLM  240
SFYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-53bHLH family protein