PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g883460.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1011aa MW: 113061 Da PI: 4.871

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g883460.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	5	50	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Pd.00g883460.m01 5 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 50 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	57	100	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Pd.00g883460.m01 57 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence
MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT 60 REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAAYVKDDNY EPGDDPRKLR 120 PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS 180 LQKRRELKAA GIDTRQRKRK RKGIDYNAEI PFEKKPPPGF YDVADEDRPV EQPQFPTTIE 240 ELEGKRRIDV EAQLRKQDIA KNKIAQRQDA PSAILQANKL NDPETVRKRS KLMLPAPQIS 300 DHELEEIAKM GYASDLAGSE ELTEGSGATR ALLANYSQTP RLGMTPQRTP QRTPSGKGDA 360 IMMEAENLAR LRESQTPLLG GDNPELHPSD FSGVTPRKKE IQTPNLMLTP SATPGGAGLT 420 PRIGMTPTRD SFGMTPKGTP IRDELRINEE IDIHDSAKLE QRRNLQFGLG NLPQPKNEYQ 480 IVMQPVPEDN EEPEEKIEED MSDRLARERA EEEARQQALL RKRSKVLQRE LPRPPAASLE 540 FIRNSLTRAD GDKSSFVPPT SVEQADEMVK KELLSVLEHD NAKYPLTEKV VKRKKKGAKR 600 SAGGPSASVP VIEEFEEDEM TEADSMIKEE AQYLRVAMGR EEESLDEFVE AHKTCLNDLM 660 YLPTRGAYGL SSVAANMEKL AALQNEFENV KKKMEDDIQK AASIESKVKV RTYGYEMRAK 720 DGLWPKIEET FKQMDTAAKE LECFKALQKQ EKLAASHRIN NIWEEVQKQK ELERNLQKRY 780 GDLVVELERV QHRMDEYRAQ AEKQEEIAAM NCDQELAVAT ENVTVLQTTE NPDPITASDE 840 LGSTVPGGAS NGEATNLQMD GNKDIDAGKD HETVSRAVNL PDNMPSAVEG ENDPNSQLTS 900 SGGIHSSGVA AQDSVSKGDN VSDNLVATEN KMVNDPDDGV ISDNMTSSVV AEDQKVEMRQ 960 NLTELEGSVQ AAGDGGLANG STTIVSIEGE VENSAENAAP NLNVFNVEET A

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence

MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT  60
REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAAYVKDDNY EPGDDPRKLR  120
PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS  180
LQKRRELKAA GIDTRQRKRK RKGIDYNAEI PFEKKPPPGF YDVADEDRPV EQPQFPTTIE  240
ELEGKRRIDV EAQLRKQDIA KNKIAQRQDA PSAILQANKL NDPETVRKRS KLMLPAPQIS  300
DHELEEIAKM GYASDLAGSE ELTEGSGATR ALLANYSQTP RLGMTPQRTP QRTPSGKGDA  360
IMMEAENLAR LRESQTPLLG GDNPELHPSD FSGVTPRKKE IQTPNLMLTP SATPGGAGLT  420
PRIGMTPTRD SFGMTPKGTP IRDELRINEE IDIHDSAKLE QRRNLQFGLG NLPQPKNEYQ  480
IVMQPVPEDN EEPEEKIEED MSDRLARERA EEEARQQALL RKRSKVLQRE LPRPPAASLE  540
FIRNSLTRAD GDKSSFVPPT SVEQADEMVK KELLSVLEHD NAKYPLTEKV VKRKKKGAKR  600
SAGGPSASVP VIEEFEEDEM TEADSMIKEE AQYLRVAMGR EEESLDEFVE AHKTCLNDLM  660
YLPTRGAYGL SSVAANMEKL AALQNEFENV KKKMEDDIQK AASIESKVKV RTYGYEMRAK  720
DGLWPKIEET FKQMDTAAKE LECFKALQKQ EKLAASHRIN NIWEEVQKQK ELERNLQKRY  780
GDLVVELERV QHRMDEYRAQ AEKQEEIAAM NCDQELAVAT ENVTVLQTTE NPDPITASDE  840
LGSTVPGGAS NGEATNLQMD GNKDIDAGKD HETVSRAVNL PDNMPSAVEG ENDPNSQLTS  900
SGGIHSSGVA AQDSVSKGDN VSDNLVATEN KMVNDPDDGV ISDNMTSSVV AEDQKVEMRQ  960
NLTELEGSVQ AAGDGGLANG STTIVSIEGE VENSAENAAP NLNVFNVEET A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	202	KRRELKAAGIDTRQRKRKRK
2	197	202	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein