PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g879830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 239aa MW: 26472.4 Da PI: 6.7027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g879830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.2	3.5e-35	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++ py+++++ + f ++h++FGas+v+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a Pd.00g879830.m01 7 PCGACKFLRRKCVRGCIFVPYLCHKEgATYFSAIHEIFGASKVSKLLAQLPLSDRCKAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQA 99 7*********************997899*********************************************************** PP DUF260 93 elallkee 100 +la+lk++ Pd.00g879830.m01 100 QLASLKDQ 107 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MPSSGSPCGA CKFLRRKCVR GCIFVPYLCH KEGATYFSAI HEIFGASKVS KLLAQLPLSD 60 RCKAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKDQAAQ SFVNGSAVAN 120 PNEKFYGKLP SHTEEAQSWF PEFENSSNSM PQFNSTHINN PGTTSYYENG IMNSNNSVNG 180 SYENSLNIPE ENVSYGSFEE GTSHSMSSFG MQTNYNRQWG FQDANELQSV VFSYIHKHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-53	LBD family protein