PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g873530.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 641aa MW: 71825.3 Da PI: 6.0564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g873530.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	442	488	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f L++++P+ + K +K++iL A+eY+k+L+ Pd.00g873530.m01 442 NHALSERRRREKLNERFCVLKSMVPSiS------KDDKVSILDDAIEYLKDLE 488 7999********************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MATRLQNQDR VPENLRKQLA LAVRSIEWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT 60 VQAIELNADQ MGLQRSEQLR ELYESLSAGE ASPQARRPSA SLSPEDLADT EWYYLVCMSF 120 VFNVGQGLPG RTLANGQPIW LCNAHYADSK VFTRSLLAKS ASIQTVVCFP FLGGVIELGV 180 TELVMEDPDL IQHVKTSFLE VPYHIASKKT NPSAGSTRND NDLACTVLDH DVMDTKLIPV 240 VGCEEMNVTS PNNSSNGLGL NQPADDSFMV EGMNGGASQV QSWQFMDDEF SNFVHHSMDS 300 SDCISQTLVY PEKVLLGPKA EKASDHCLHD LKERNSTKLT SLNPQSNDLQ YQSVLSVLLK 360 GSHQLILGPN FQNCHQESSF VSWKRGGLVK CRKQRGGSPQ KLLKQILFEV PRMHVDCVLE 420 CPEDNSNRNG VWRPEADEIG MNHALSERRR REKLNERFCV LKSMVPSISK DDKVSILDDA 480 IEYLKDLEKR VEELESCREP SDLEAKIKRK IQDTIERTSD NCCNTKISNG KKPLVYKRKA 540 SDIDETEPEI RYVVSNHGSS DNITVNMNNK DVLIEMKFPW REGVLLEIMD ATSRLQLDTH 600 SVQSSTADGI LSVTIKSRFK GLTVASAGTI QQALQRVTRS C

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MATRLQNQDR VPENLRKQLA LAVRSIEWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELNADQ MGLQRSEQLR ELYESLSAGE ASPQARRPSA SLSPEDLADT EWYYLVCMSF  120
VFNVGQGLPG RTLANGQPIW LCNAHYADSK VFTRSLLAKS ASIQTVVCFP FLGGVIELGV  180
TELVMEDPDL IQHVKTSFLE VPYHIASKKT NPSAGSTRND NDLACTVLDH DVMDTKLIPV  240
VGCEEMNVTS PNNSSNGLGL NQPADDSFMV EGMNGGASQV QSWQFMDDEF SNFVHHSMDS  300
SDCISQTLVY PEKVLLGPKA EKASDHCLHD LKERNSTKLT SLNPQSNDLQ YQSVLSVLLK  360
GSHQLILGPN FQNCHQESSF VSWKRGGLVK CRKQRGGSPQ KLLKQILFEV PRMHVDCVLE  420
CPEDNSNRNG VWRPEADEIG MNHALSERRR REKLNERFCV LKSMVPSISK DDKVSILDDA  480
IEYLKDLEKR VEELESCREP SDLEAKIKRK IQDTIERTSD NCCNTKISNG KKPLVYKRKA  540
SDIDETEPEI RYVVSNHGSS DNITVNMNNK DVLIEMKFPW REGVLLEIMD ATSRLQLDTH  600
SVQSSTADGI LSVTIKSRFK GLTVASAGTI QQALQRVTRS C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	447	452	ERRRRE
2	448	453	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein