PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g869240.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 34750.6 Da PI: 7.2271 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.2 | 8.7e-08 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Pd.00g869240.m01 140 HYCEICGKGFKRDANLRMHMRAH 162 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 226 | 249 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + Pd.00g869240.m01 226 YSCNRCNkKSFSVVADLKSHLKHC 249 99*******************977 PP | |||||||
3 | zf-C2H2 | 13.5 | 0.00021 | 257 | 273 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ Pd.00g869240.m01 257 TCGTSFSRKSKLFGHMA 273 6**************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence |
MSFTGQPFNI PAVCSVAPAA EDPDPEVPLR NLSMVRTRMD SLQCFLTESI NANALISKDQ 60 MDMVSAGIAS AIRETISNGA ALLACSQNLG PASYPTRTPA ANNEAATEVK KEEENDFQND 120 DAEGEIVEVD AMELLAEHIH YCEICGKGFK RDANLRMHMR AHGNRFKTPE ALAKPDKNPA 180 EPSRKTRFSC PYIGCNRNKG HVKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA 240 DLKSHLKHCG EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKSDIE FSELLGGFGS 300 MDGYFLEDML VDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 3e-76 | C2H2 family protein |