PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g862640.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 232aa    MW: 25896.8 Da    PI: 5.2287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g862640.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.66.3e-36131121100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCa+Ck++rrkC + C +apyfpa++ ++f+n++k+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+++ l+ q++ l+ e
  Pd.00g862640.m01  13 ACASCKHQRRKCDETCEMAPYFPASRYSEFQNAQKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVHGCLGIVRGLNAQIQGLERE 105
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+ +k++
  Pd.00g862640.m01 106 LHIVKQH 112
                       ***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MENRDQVAAQ NHACASCKHQ RRKCDETCEM APYFPASRYS EFQNAQKIFG VSNIQKIMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVHGCLG IVRGLNAQIQ GLERELHIVK QHLELCKEKE  120
ELDGKKNQSK AEDLQHDQSD GLNFPSPILP DLPSHVMAEM RKYEQGYNYW STLEDAEEEV  180
FDIRLTEPVL FESNLKGNAS SSGSGKSSAA ASKAKEKQPS ESLREKTTED EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-29LBD family protein