PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g860720.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 276aa MW: 31299.4 Da PI: 6.5878 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.7 | 2.1e-34 | 99 | 245 | 2 | 131 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesss 79 +++k rhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+i+WL+++ak+ai +l + Pd.00g860720.m01 99 TARKERHSKVYTSKGPRDRRFRLSAPTAIQFYDVQDRLGYDRPSKAIDWLIEKAKAAIEALSEPelpgkeydctninnsA------------- 178 789************************************************************96666666554432221............. PP TCP 80 ssasnsssg..............kaaksaakskksqksaa.salnlak.esrakarararertrekmr 131 ++ ++ +g ++++ ++ +s k++ +++l+ + ++a a t +km Pd.00g860720.m01 179 -QQTEQDIGeesmrqfqhhqrsyGGEPEKLNNVNSFKESVlDHHQLSSmNYAEEALNSASSLTDSKME 245 .2222222222222222111222222222222222222220222222222335555556666666665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence |
MLQQRGSKNE DQDQPEDVQE EEQQSQKRLI GQYQHVQEPP NYGPLNGKML NTHIAKSSRK 60 SCYSMSSSSS HLASEQAEIN NARYGKIVKV HGGHIVRSTA RKERHSKVYT SKGPRDRRFR 120 LSAPTAIQFY DVQDRLGYDR PSKAIDWLIE KAKAAIEALS EPELPGKEYD CTNINNSAQQ 180 TEQDIGEESM RQFQHHQRSY GGEPEKLNNV NSFKESVLDH HQLSSMNYAE EALNSASSLT 240 DSKMEVAWFQ SLMAWNYNAG DGGEGCPFNS SHVYLQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-39 | TCP family protein |