PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g852440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 422aa    MW: 45849.2 Da    PI: 9.2077
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g852440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.7e-1481129155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Pd.00g852440.m01  81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 129
                       89****9888.8*********3.....5**********99*************98 PP
2B396.22.1e-30219332196
                       EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                       f+k+ tpsdv+k++rlv+pk++ae+h                  gg+  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L+
  Pd.00g852440.m01 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLQ 311
                       89****************************999998888888876676799****************************************** PP

                       TT-EEEEEE-SSSEE..EEEE CS
                B3  76 egDfvvFkldgrsefelvvkv 96 
                       +gD+v F+++  ++++l++ +
  Pd.00g852440.m01 312 AGDIVSFQRSTGQDKQLYIDW 332
                       ********8766777777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MDGISLSGTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS  60
EISSGGVGGG IEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAAKAY  120
DVAAQRFRGR DAVTNFKPSP TGTGTDEDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE  180
QSKRNNYGFL DANGKRARAH GPLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH  240
AEKHFPLQSG NNFNNHTTTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG  300
WSRFVKEKNL QAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQPVQMVR  360
LFGVNIFKIP GSGGGAVVDA ATAAAIGGGS CNNNINNVGK RMREMELLEL EFSKKPRIIG  420
AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-128RAV family protein