PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g850660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23820.2 Da PI: 9.9945 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g+lyeys+ Pd.00g850660.m01 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 82.7 | 8.4e-28 | 78 | 166 | 5 | 93 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++s +e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+qLe++Le+++++iRskK+ l ++ l+ k e++++++a Pd.00g850660.m01 78 GSTSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSVKELKQLENRLERGINRIRSKKEIELENENVCLRTKISEVERIQQA 166 34558999************************************************************************999988775 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEVALIVFSS RGRLYEYSNN 60 NIRNTIERYK KACSDSSGST SITEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDALSTLS 120 VKELKQLENR LERGINRIRS KKEIELENEN VCLRTKISEV ERIQQANMVG PELNVIQALA 180 SRNFFSQNMM EGGATYPQQD KKILHLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.2 | 1e-113 | MIKC_MADS family protein |