PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g825880.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 228aa MW: 24671.3 Da PI: 11.7404 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124 | 1.7e-38 | 36 | 125 | 2 | 92 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++++ss+ +++ Pd.00g825880.m01 36 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGAPSSAPSST 125 78******************************************************************9777.555555555444332222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MSNSEAPNNE LTNGGGGGGM VEQQASQRPS SNGVLAVKKP PSKDRHSKVD GRGRRIRMPI 60 ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGAPSS 120 APSSTTSSDH KPHLIGGPTP FILGKRVPTA DGRGLSGQSG KLPSRTSQFV GFFVGRAREF 180 WSERRRPALK TRIIDRRFLV VGSCWWWCAL LVYINMCLLP VKRKKHVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-44 | TCP family protein |