PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g823980.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 449aa MW: 51130.2 Da PI: 9.6658 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 51 | 104 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Pd.00g823980.m01 51 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 104 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 50 | 140 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k++n++L++++++L++e+ Pd.00g823980.m01 50 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAIKADNDALQAQNQKLQAEI 140 69**************************************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence |
MRHEEEGWAL GQRSVASFLG KRSVSFSGIE LGEEAHGEDD LSDDGSQAGE KKRRLNMEQV 60 KTLEKNFELG NKLEPERKMQ LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYDVLKRQFE 120 AIKADNDALQ AQNQKLQAEI LALKSREPAE SINLNKETEG SCSNRSENNS DIKLDISRTP 180 AIDSPQSTHP NPTSRTLFSS SLIRPSPGVA QLFQNTSRPE VIQCQKIDQM VKEESLTNMF 240 CGIDDQSAGL NIKFNFQVGA GNLYGGINKG YQMVNKIYLK LKEEYKIERE RQREYPARIP 300 RGNEDKEIEE WRKQSGKKKP TTETIFFDGG AHYGDLLANL ILGFTLLWLP LTLAAVFRAF 360 FLRYRFTNLR VTVISGLTGQ DRSDFSYKVI KDVQVVPRFI GEWGDIIITL RDGTKVDLRS 420 VPKFREIAKY CLSLADKPAV LKEKGSKGF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 99 | 107 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-94 | HD-ZIP family protein |