PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g822040.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 436aa MW: 49080.6 Da PI: 5.0321 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.8 | 3.4e-24 | 262 | 305 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g822040.m02 262 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 305 69****************************************96 PP | |||||||
2 | K-box | 46.3 | 1.8e-16 | 24 | 108 | 13 | 97 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +s ++++ +L ke+e+ +++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i l +k el ++nk+Lr++ Pd.00g822040.m02 24 ELQSENENHIRLSKELEEKSHQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQR 108 5788899999*************************************************************************97 PP | |||||||
3 | K-box | 33.3 | 2e-12 | 337 | 402 | 19 | 84 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K l+e ++l++++ Pd.00g822040.m02 337 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKGAELVEANNQLRQRM 402 34457888888888*******************************************999999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence |
MKDVIERYQA HINGGEKFDE PSIELQSENE NHIRLSKELE EKSHQLRQMK GEDLEELNFD 60 ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL 120 MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT 180 KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRGEAAIF LSHSLSFSEN TRTSDPGTPQ 240 KVGMVKTMRK KIKIKKIDYL PARQVTFSKR RRGIFKKAEE LSVLCESEVA VVIFSATGKL 300 FDYSSSSTKD VVERYKAHTN GVEKSDELSV ELQLEIENHI RLTKELEEKS RQLRQMRGED 360 LEELNIDELQ KLEQLVDASL GRVIETKGAE LVEANNQLRQ RMLSRGNIGP ALMEPESLSL 420 EDDCSDVTLA LKLGLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-49 | MIKC_MADS family protein |