PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g821950.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 121aa MW: 13897.2 Da PI: 10.4605 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.5 | 8.2e-24 | 67 | 110 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g++KKA ELSvLC+ evav+ifs t+kl++yss Pd.00g821950.m02 67 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATDKLFDYSS 110 69****************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence |
MLRFALSRYK INGGDCMHQR QGASVPVDLL SFSGQTKTSD RAETPTREMV KMMREKIKIK 60 KIDYLPARQV TFSKRRRGLF KKAAELSVLC ESEVAVVIFS ATDKLFDYSS SRYQHPPLYT 120 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-22 | MIKC_MADS family protein |