PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g809490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 368aa MW: 40850.4 Da PI: 4.6566

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g809490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.9	1.8e-29	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGa++++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+++ + +a Pd.00g809490.m01 8 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEHVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g809490.m01 101 QLDEAHEQL 109 **99985 PP
2	DUF260	47.7	4.3e-15	201	272	30	101
DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +h +FGa++++++l+ lp +er a ++++eA+ +a dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g809490.m01 201 ISSIHNVFGARKMSRILSMLPMSERAVASWTMTFEAHDKAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 272 6789***************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP IYGATSYILD LQEHVLNIQA QLDEAHEQLA CAIAHVADPN 120 QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY HVSGSYKNTV 180 NIPTENVADG WVNNEEAITD ISSIHNVFGA RKMSRILSML PMSERAVASW TMTFEAHDKA 240 VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN EQSEVANPTE 300 QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHDDPSTS AGKGSNLTET PSSFLVGEGA 360 RIWAKSKH

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAITDFSS IHNVFGANKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP IYGATSYILD LQEHVLNIQA QLDEAHEQLA CAIAHVADPN  120
QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY HVSGSYKNTV  180
NIPTENVADG WVNNEEAITD ISSIHNVFGA RKMSRILSML PMSERAVASW TMTFEAHDKA  240
VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN EQSEVANPTE  300
QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHDDPSTS AGKGSNLTET PSSFLVGEGA  360
RIWAKSKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-38	LBD family protein