PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g802780.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 415aa MW: 45357.1 Da PI: 7.3754 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 350 | 395 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Pd.00g802780.m01 350 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 395 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence |
MESDLQPHHH KPQQHMNSSL MRYRSAPSSY FANILDSDFC EPLFNRPSSP ETERIFARFL 60 TGEGGGGGGG TEETASHHKV TTQTNNQQTQ FMVPKVDNEA GVIQQQQSHL NNYSSVSQGF 120 YQSPSSKPPL PNQSLNSANE GAYSMGTSQL PSVKTGGVTN SNLIRHSSSP AGLFSHMNID 180 VAGYAALRGM GNYGASNSTN EEASFSSTSR LKNFSSGPPS TSGLMSPIAE IGNKRMRSDN 240 QDSRGFGDGS GNNYVTGFPI DSWDDSAMMS DGITRSTSFR EDDIKAFTGL SSSETQDVEA 300 GNRPPTLLAH HLSLPKTSAE MAAVEKFMQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI 360 SERMRKLQEL VPNMDKQTNT ADMLDLAVEY IKDLQTQVQT LSDNRAKCTC SSKQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-74 | bHLH family protein |