PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g789730.m01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 992aa    MW: 109413 Da    PI: 8.097
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g789730.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.98.9e-4167144178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Pd.00g789730.m01  67 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 144
                       6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    
MLHLGSSRTE QGKKEEASGA VKNTAEDEDD ESLQLNLAGG LTSVEEPVPR PNKRVRSGSP  60
GNGSYPMCQV DNCKEDLSNA KDYHRRHKVC EIHSKATKAP VAKQMQRFCQ QCSRFHPLSE  120
FDEGKRSCRR RLAGHNRRRR KTQPEDVTSR LTLPGDGDNK SIGNLDIVNL LAAITRPQGK  180
NDVRNINCSS VLDREQLLQI LSKINSLPLP ADLAAKLPNL GSLNRKAAEL LALDLQNKLN  240
GRTSSSTVDL LTVLSATLAA SSPEALAMLS QKSSQSSDSE KTKLTCSDQA AGPNLHKIPT  300
QEFNSAGGER SSTSYQSPME DSDCQVQETR VNLPLQLFSS SPENDSPPKL ASSRKYFSSD  360
SSNPTEDRSP SSSPPVVQTL FPMKSMAETV KSEKLSVSKE VNANPDSSRT RGCNMPFDLF  420
RGSNRGADAS SIQSFPHQAG YTSSGSDHSP SSLNSDPQDR TGRILFKLFD KDPSHLPGSL  480
RTQIYNWLSN SPSEMESYIR PGCVVLSVYV SMSSAAWEQF EGNLVQRVSS LVQSSDSDFW  540
RSGRFLVHTG RQLASHKDGK IRICKAWRSC SSPELISVSP LAVVGGQETS LVLRGRNLTN  600
LGTRIHCTYL GGYTSKEATG STYHGTMYDE INLGSFQVHD ASPGVLGRCF IEVENGFKGN  660
SFPVIIADAS ICRELRLLES VFDAEAKACD VISEDENRDY GRPTSREEVL HFLNELGWLF  720
QRKRICSMLQ EPRYSLSRLK FLLTFTVEKD CCVLVKTLLD ILFERNLDGD GLLGESLGML  780
SDIQLLNRAV KRRCRKMVDL LVNYSVISSD KRYIFPPNLA GPGGMTPLHL AACMSNTDDM  840
IDALTNDPQE IGLNCWNSLL DANGQSPYAY SLMRNNYSYN KLVARKLADR RNSQVTVTIG  900
NEIEQPQMTM ELEHRTSTQF RQGSGSCAKC AMAASKYRRR VPGAQGLLQR PFIHSMLGIA  960
AVCVCVCLFL RGSPDIGLVA PFKWENLDFG TI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1788793RAVKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0SBP family protein