PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g789730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 992aa MW: 109413 Da PI: 8.097 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.9 | 8.9e-41 | 67 | 144 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Pd.00g789730.m01 67 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 144 6**************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 992 aa Download sequence |
MLHLGSSRTE QGKKEEASGA VKNTAEDEDD ESLQLNLAGG LTSVEEPVPR PNKRVRSGSP 60 GNGSYPMCQV DNCKEDLSNA KDYHRRHKVC EIHSKATKAP VAKQMQRFCQ QCSRFHPLSE 120 FDEGKRSCRR RLAGHNRRRR KTQPEDVTSR LTLPGDGDNK SIGNLDIVNL LAAITRPQGK 180 NDVRNINCSS VLDREQLLQI LSKINSLPLP ADLAAKLPNL GSLNRKAAEL LALDLQNKLN 240 GRTSSSTVDL LTVLSATLAA SSPEALAMLS QKSSQSSDSE KTKLTCSDQA AGPNLHKIPT 300 QEFNSAGGER SSTSYQSPME DSDCQVQETR VNLPLQLFSS SPENDSPPKL ASSRKYFSSD 360 SSNPTEDRSP SSSPPVVQTL FPMKSMAETV KSEKLSVSKE VNANPDSSRT RGCNMPFDLF 420 RGSNRGADAS SIQSFPHQAG YTSSGSDHSP SSLNSDPQDR TGRILFKLFD KDPSHLPGSL 480 RTQIYNWLSN SPSEMESYIR PGCVVLSVYV SMSSAAWEQF EGNLVQRVSS LVQSSDSDFW 540 RSGRFLVHTG RQLASHKDGK IRICKAWRSC SSPELISVSP LAVVGGQETS LVLRGRNLTN 600 LGTRIHCTYL GGYTSKEATG STYHGTMYDE INLGSFQVHD ASPGVLGRCF IEVENGFKGN 660 SFPVIIADAS ICRELRLLES VFDAEAKACD VISEDENRDY GRPTSREEVL HFLNELGWLF 720 QRKRICSMLQ EPRYSLSRLK FLLTFTVEKD CCVLVKTLLD ILFERNLDGD GLLGESLGML 780 SDIQLLNRAV KRRCRKMVDL LVNYSVISSD KRYIFPPNLA GPGGMTPLHL AACMSNTDDM 840 IDALTNDPQE IGLNCWNSLL DANGQSPYAY SLMRNNYSYN KLVARKLADR RNSQVTVTIG 900 NEIEQPQMTM ELEHRTSTQF RQGSGSCAKC AMAASKYRRR VPGAQGLLQR PFIHSMLGIA 960 AVCVCVCLFL RGSPDIGLVA PFKWENLDFG TI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 788 | 793 | RAVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | SBP family protein |