PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g784960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 540aa MW: 59378 Da PI: 6.5706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g784960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	306	348	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Pd.00g784960.m01 306 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 348 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MLEGDWYMNN VLNPTHHQDL HSLPNHRQPD IRDIACFSEN TLMLQPMDSS ASCSPSQAFS 60 LDPSPPQHLF PPKSCFSSLL NVVSTNPFDN GFDLGCDSGF LSSFQGNQPS NSSALMGFAA 120 LNSQSQMGTP ELSSSAEFPT TRLLPAPNND TELDGDFSLT SFQGFDGSGG AQLLNRAKPL 180 RPLHVFPPVG AHPTLFQKRA ALRQNSGGDG TDKLGNLEIS GPRYGGVLES LERKRKKNVE 240 GEMEEGSMDV SGLNYDSDEF NEYSQVEENV KNVKNAGSNS NANSTVTGID GDRKGKKKGL 300 PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ RINDLHNELE 360 SAPPGSLLPP SSCFQPLTPT PPTLPCRVKE ELCPSSFPSP KGQPAKVEVR VREGRTVNIH 420 MFCARRPGLL LSAMRALDNL GLDIQQAVIS CFNGFALDVF RAEQCRESQF LPEQIKAVLL 480 DSAGFHEMIF SESKRDHHTA SAALSASPST EREEKEAQAL PAFRLHFVSR SSCCWLKLEI

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MLEGDWYMNN VLNPTHHQDL HSLPNHRQPD IRDIACFSEN TLMLQPMDSS ASCSPSQAFS  60
LDPSPPQHLF PPKSCFSSLL NVVSTNPFDN GFDLGCDSGF LSSFQGNQPS NSSALMGFAA  120
LNSQSQMGTP ELSSSAEFPT TRLLPAPNND TELDGDFSLT SFQGFDGSGG AQLLNRAKPL  180
RPLHVFPPVG AHPTLFQKRA ALRQNSGGDG TDKLGNLEIS GPRYGGVLES LERKRKKNVE  240
GEMEEGSMDV SGLNYDSDEF NEYSQVEENV KNVKNAGSNS NANSTVTGID GDRKGKKKGL  300
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ RINDLHNELE  360
SAPPGSLLPP SSCFQPLTPT PPTLPCRVKE ELCPSSFPSP KGQPAKVEVR VREGRTVNIH  420
MFCARRPGLL LSAMRALDNL GLDIQQAVIS CFNGFALDVF RAEQCRESQF LPEQIKAVLL  480
DSAGFHEMIF SESKRDHHTA SAALSASPST EREEKEAQAL PAFRLHFVSR SSCCWLKLEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	237	RKRKK
2	296	314	KKKGLPAKNLMAERRRRKK
3	308	315	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-142	bHLH family protein