PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g782280.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 494aa MW: 53919.6 Da PI: 9.4863 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 1e-40 | 185 | 261 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ Pd.00g782280.m01 185 CQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVEGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 261 **************************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 494 aa Download sequence |
MNSVLLMEWN EKPPSLWDLE NLFMFGAKVT DNSKKLQPAD WGIEGERGMN SESFYSTGVD 60 GGSGVSGSDL GDGSSKSSKS ASINSSVGES KKPNFSLDAF EGFPNDFIHK NESAKVEALG 120 SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNPKSSSL SVISSSMPKT KRSKSTGQSA 180 FAPHCQVEGC NIDLSSAKDY HRKHRICANH SKSPKVVVEG VERRFCQQCS RFHGLSEFDE 240 KKRSCRRRLS DHNARRRKPQ TEALRNPTRL SSSLFNERQQ MGLVLDQAPS VYTRHPSNLT 300 WDGACSFKFG QTKEYFPKPA KGGGTGGQLN LANNGIPSSI TMLYHDSSRQ SPSKGTAAEV 360 LNRGAEESMI SFNLGATQDF HRALSLLSTS SWVSGEAKPV ALDNNTNQNY QNNIPQPGMQ 420 AMTQGLPVSS EIFIGSKGLM SLVIKPTNSI KFDPKDSSFF HINVTLIKEL STALVLQPTR 480 FQILRCVVAN SRAV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 241 | 258 | KKRSCRRRLSDHNARRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.1 | 3e-75 | SBP family protein |