PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g763600.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | RAV | ||||||||
Protein Properties | Length: 334aa MW: 38652 Da PI: 8.9452 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.4 | 1.6e-12 | 20 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a +++g Pd.00g763600.m01 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIRFRG 68 78****9888.8*********3.....5*********************999887 PP | |||||||
2 | B3 | 95.5 | 3.6e-30 | 152 | 254 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv++++r+v+pk++ae+h + +e +++ l +ed +g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F++++ Pd.00g763600.m01 152 FEKVATPSDVGRLNRMVIPKQHAEKHfpshlS--EElcKGVLLNFEDGEGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFERSR 242 89*************************99552..44448899************************************************987 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +e++ ++ + Pd.00g763600.m01 243 GEEKKIFIDCRP 254 788878777665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence |
MDVLNESTSE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD 60 IASIRFRGLE TITNFNQNQV KPYMDNDKET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK 120 LFNAGDDDAA RKRIKCHVNL TEGYDHQREW LFEKVATPSD VGRLNRMVIP KQHAEKHFPS 180 HLSEELCKGV LLNFEDGEGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER 240 SRGEEKKIFI DCRPRNVKVS GLGEMASRVE VEEPLSRVQV DDGVVRLFGV NIVETCSCIV 300 DNNMRWRLGE RISSQSPISM KLDLYKCDKA YHGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-104 | RAV family protein |