PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g748950.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 314aa MW: 36410.4 Da PI: 8.3481 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 20 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a +++g Pd.00g748950.m01 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIRFRG 68 78****9888.8*********3.....5*********************999887 PP | |||||||
2 | B3 | 95.1 | 4.7e-30 | 152 | 254 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv++++r+v+pk+ ae+h + +e +++ l +ed +g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F++++ Pd.00g748950.m01 152 FEKVATPSDVGRLNRMVIPKQQAEKHfpshlS--EElcKGVLLNFEDGEGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFERSR 242 89*************************99552..44448899************************************************998 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +e+++++ + Pd.00g748950.m01 243 GEEKKMFIDCRP 254 899989888776 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence |
MDVLNESISE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD 60 IASIRFRGLE TITNFNQNQV KPYMDNDKET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK 120 LFNAGDEDAA RKRIKCHVNL MEGYDHQREW LFEKVATPSD VGRLNRMVIP KQQAEKHFPS 180 HLSEELCKGV LLNFEDGEGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER 240 SRGEEKKMFI DCRPRNVEVS GLGEMASRVE VEEPLSRVQV DDGVVRLFGV NIVETCSCIV 300 DNNMRWRLGE RISS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-103 | RAV family protein |