PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g744660.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | SBP | ||||||||
Protein Properties | Length: 266aa MW: 29919 Da PI: 9.053 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 87.6 | 1.5e-27 | 28 | 96 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvCe+hska++v+v g+eqrf lsefDe+krsCrrrLa+hnerrrk+++ Pd.00g744660.m01 28 RCQVEGCHVPLMNAKEYHRRHKVCEMHSKASKVTVLGQEQRF---------LSEFDESKRSCRRRLAGHNERRRKSSH 96 6****************************************9.........9***********************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MSKRGRGGAA AQQLYGSRAT LALKVVPRCQ VEGCHVPLMN AKEYHRRHKV CEMHSKASKV 60 TVLGQEQRFL SEFDESKRSC RRRLAGHNER RRKSSHDSLS RTSSQEKGRF GYLSTPTGRA 120 LSLLSARNTG FDSWVSPSDL SSRSSAALRE LIAENRAAVL ARQLINSSED RNWDSSSHNH 180 ATEDLFCDHG QSWSNSVEPQ QHQMFSDHNY QHGWDRFHEG SGAHLTLDLR QAPSPAYGFL 240 PERGKTKGED DQECDLWNSF HGASVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 4e-27 | SBP family protein |