PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g725410.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 494aa MW: 53807.9 Da PI: 7.7264

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g725410.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.6e-10	128	152	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pd.00g725410.m02 128 GEKDCAHYMLTRTCKFGELCKFDHP 152 7889********************8 PP
2	zf-CCCH	28.4	2.9e-09	179	205	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Pd.00g725410.m02 179 PGEPDCPYFIKTQRCKFGMRCKFNHPK 205 5789*********************96 PP
3	zf-CCCH	37.7	3.5e-12	228	252	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Pd.00g725410.m02 228 EPPCAFYLKTGQCKFGATCKFHHPK 252 79*********************96 PP
4	zf-CCCH	38.5	2e-12	304	329	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Pd.00g725410.m02 304 PGEPDCPFYLKTGSCKYGATCRYNHP 329 5789*********************9 PP
5	zf-CCCH	38.7	1.6e-12	388	409	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C+yG++Ck++H+ Pd.00g725410.m02 388 ECDYYMKTGECRYGEQCKYHHP 409 7********************8 PP
6	zf-CCCH	40.3	5.4e-13	440	465	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Pd.00g725410.m02 440 GVAICVYYLKTGTCKYGATCKFDHPP 465 5789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MSSHLYGYGA AQSAAAAGLS SVYTSRALTD PTLRYLSGSD PFASATDHHS RSTSMYLATS 60 HLMSQSSWPA PDVEPGVPGV KRPSEALYHQ SFMGAYNTIG QEAWYSALAK RPRYESASNL 120 PIYPQRPGEK DCAHYMLTRT CKFGELCKFD HPIWVPEGGI PDWKEVPLVA PSESLPERPG 180 EPDCPYFIKT QRCKFGMRCK FNHPKEKLAA AVASENADVF ALPERPSEPP CAFYLKTGQC 240 KFGATCKFHH PKDIQIQIPS AEQENKIGET GTTIQPEGTG FAVKLPVSFS PALLYNSKEL 300 PVRPGEPDCP FYLKTGSCKY GATCRYNHPD RYAINPPIGA ISHSIVAPPA AGLNIGVINP 360 AASIYQTLAQ PTVGGGQTVY PQRVGQIECD YYMKTGECRY GEQCKYHHPI DRSAVALSTT 420 IPVQQQNVKL TLAGLPRREG VAICVYYLKT GTCKYGATCK FDHPPPGEVM GMAASQGASG 480 GEAKADDFTQ EQQQ

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MSSHLYGYGA AQSAAAAGLS SVYTSRALTD PTLRYLSGSD PFASATDHHS RSTSMYLATS  60
HLMSQSSWPA PDVEPGVPGV KRPSEALYHQ SFMGAYNTIG QEAWYSALAK RPRYESASNL  120
PIYPQRPGEK DCAHYMLTRT CKFGELCKFD HPIWVPEGGI PDWKEVPLVA PSESLPERPG  180
EPDCPYFIKT QRCKFGMRCK FNHPKEKLAA AVASENADVF ALPERPSEPP CAFYLKTGQC  240
KFGATCKFHH PKDIQIQIPS AEQENKIGET GTTIQPEGTG FAVKLPVSFS PALLYNSKEL  300
PVRPGEPDCP FYLKTGSCKY GATCRYNHPD RYAINPPIGA ISHSIVAPPA AGLNIGVINP  360
AASIYQTLAQ PTVGGGQTVY PQRVGQIECD YYMKTGECRY GEQCKYHHPI DRSAVALSTT  420
IPVQQQNVKL TLAGLPRREG VAICVYYLKT GTCKYGATCK FDHPPPGEVM GMAASQGASG  480
GEAKADDFTQ EQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein