PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g725410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 498aa    MW: 54244.4 Da    PI: 7.5716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g725410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.6e-10128152226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C +++ t tCk+G+ CkF H+
  Pd.00g725410.m01 128 GEKDCAHYMLTRTCKFGELCKFDHP 152
                       7889********************8 PP
2zf-CCCH28.32.9e-09179205127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f +t  Ck+G rCkF+H++
  Pd.00g725410.m01 179 PGEPDCPYFIKTQRCKFGMRCKFNHPK 205
                       5789*********************96 PP
3zf-CCCH37.73.5e-12228252327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG+Ck+G++CkF+H++
  Pd.00g725410.m01 228 EPPCAFYLKTGQCKFGATCKFHHPK 252
                       79*********************96 PP
4zf-CCCH38.42e-12304329126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+++tG CkyG++C+++H+
  Pd.00g725410.m01 304 PGEPDCPFYLKTGSCKYGATCRYNHP 329
                       5789*********************9 PP
5zf-CCCH38.71.6e-12392413526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+++++tG+C+yG++Ck++H+
  Pd.00g725410.m01 392 ECDYYMKTGECRYGEQCKYHHP 413
                       7********************8 PP
6zf-CCCH40.35.4e-13444469227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       + ++C ++++tGtCkyG++CkF H+p
  Pd.00g725410.m01 444 GVAICVYYLKTGTCKYGATCKFDHPP 469
                       5789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MSSHLYGYGA AQSAAAAGLS SVYTSRALTD PTLRYLSGSD PFASATDHHS RSTSMYLATS  60
HLMSQSSWPA PDVEPGVPGV KRPSEALYHQ SFMGAYNTIG QEAWYSALAK RPRYESASNL  120
PIYPQRPGEK DCAHYMLTRT CKFGELCKFD HPIWVPEGGI PDWKEVPLVA PSESLPERPG  180
EPDCPYFIKT QRCKFGMRCK FNHPKEKLAA AVASENADVF ALPERPSEPP CAFYLKTGQC  240
KFGATCKFHH PKDIQIQIPS AEQENKIGET GTTIQPEGTG FAVKLPVSFS PALLYNSKEL  300
PVRPGEPDCP FYLKTGSCKY GATCRYNHPD RYDFCAAINP PIGAISHSIV APPAAGLNIG  360
VINPAASIYQ TLAQPTVGGG QTVYPQRVGQ IECDYYMKTG ECRYGEQCKY HHPIDRSAVA  420
LSTTIPVQQQ NVKLTLAGLP RREGVAICVY YLKTGTCKYG ATCKFDHPPP GEVMGMAASQ  480
GASGGEAKAD DFTQEQQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein