PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g711580.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26126.4 Da PI: 8.0408 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Pd.00g711580.m01 66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 119 55679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.2 | 2.2e-38 | 66 | 155 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rls++q+++LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l Pd.00g711580.m01 66 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 155 9*************************************************************************************9766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MDWNSNLRHL VSRPEPSFGF LYNYNYDCYP PGMEMKHQAM MSESSQGLVP GLDRNHSSYG 60 CSSQDKKKRL STDQLESLER SFQEEIKLDP DRKMKLSREL GLQPRQIAVW FQNRRARWKA 120 KQLERLYDAL KQEYDVVSKE KQKLQEEVMK LKTILRDEVA RKQVSTGYTE ISGEETVEST 180 SVAIRSSNKG GGTSQHQVQE CNYLFNVEEY NPVSPPFWGA LPSYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 66 | 95 | KKKRLSTDQLESLERSFQEEIKLDPDRKMK |
2 | 114 | 122 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-57 | HD-ZIP family protein |