PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g700950.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 633aa MW: 71313.7 Da PI: 9.2127

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g700950.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.2	2.4e-12	464	488	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pd.00g700950.m01 464 CSGCRSILLYPRGATNVCCALCNII 488 **********************975 PP
2	zf-LSD1	41.2	2.6e-13	503	527	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pd.00g700950.m01 503 CGGCRTLLMHTRGATSVRCSCCHTV 527 ************************9 PP
3	zf-LSD1	45.1	1.7e-14	541	565	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Pd.00g700950.m01 541 CGNCRTTLMYPYGAPSVKCAVCHYV 565 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MFVKMMRVRC MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK QPHQHFLAVR 60 LKTTSSQYVA SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH 120 LNRGAVSFLR KYPHIFHIYH DPMKSQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL 180 LSMSRSRMLP LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD 240 KFTAAVENWR VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY 300 DEVSEKKRSS KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL 360 DHPGIFYLST KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI 420 ASNKEADSLG QICEDMRISS LVGLWEDFKE PEFHEESMQS QLVCSGCRSI LLYPRGATNV 480 CCALCNIITP VPPPGTEMAQ LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN 540 CGNCRTTLMY PYGAPSVKCA VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH 600 SQSQTVVVEN PMSVDESGKL VSNVVVGVTT GKK

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MFVKMMRVRC MGAFSNPIAS NTAPVARGVV KFEFFEQNQM GTQFTRWIMK QPHQHFLAVR  60
LKTTSSQYVA SRARDPTFEK LMDKYKNLLK VIAVQDLILA NPTNPAVSID FLSRLSQKLH  120
LNRGAVSFLR KYPHIFHIYH DPMKSQTFCR LTDAAIQISK EEAEVINASL PLVVDRLVRL  180
LSMSRSRMLP LRAILKVGRE LGLPDDFEDS VISRNSHLFQ LCDAHEPNTH NLKLFDVIPD  240
KFTAAVENWR VEEYCKEGCN VDRAEIQFSF KHGYPPGMRL RKNFRAKVKE WQRLPYVGPY  300
DEVSEKKRSS KAGMMAVEKR AVATVHEFLN LTVEKTVEVE KISHFRKWFG FDLNIRDLFL  360
DHPGIFYLST KGKRHTVFLR EAYERGCLIH PNPVYHARRK LLDLVVLGRH GLLTDELRSI  420
ASNKEADSLG QICEDMRISS LVGLWEDFKE PEFHEESMQS QLVCSGCRSI LLYPRGATNV  480
CCALCNIITP VPPPGTEMAQ LICGGCRTLL MHTRGATSVR CSCCHTVNLA PASSQVAHVN  540
CGNCRTTLMY PYGAPSVKCA VCHYVTNVGM TNMRVPIPVH RPNGTANSGM APSTSTAMPH  600
SQSQTVVVEN PMSVDESGKL VSNVVVGVTT GKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-72	LSD family protein