PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g696920.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1190aa MW: 132228 Da PI: 6.2284

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g696920.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	585	607	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC F+Hgp Pd.00g696920.m01 585 VPCIFFQK-GQCLKGDRCAFSHGP 607 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence
MDYERIQKPQ GGGGFSPGKL RIMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN 60 CKDVDVVSVL PECSTSTAAD SVGSEMLSDR RLKDNTSVNS RVRNQEDPSL DYDSGHDALS 120 VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG 180 SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY 240 PIADSYGKPV LMIENSVGES AINLSQHDAS AALHGTTTFI PPPSTARSVS MRDMGTEMTP 300 IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPASSLI DQEANKELSE KELQMKTRRE 360 IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR 420 FKREELKIQA WENHQKAKTE ADMRKIEVEV ERIRGRAHSL DKKRQKRRSY FREWGKPPQQ 480 PETTAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSEYA RVNPRDCWYW LNGNCLNLKC 540 AFRHPPLDGL LGSPAATSAG PSLPLSHTVA TPTTPATYNS SKQAVPCIFF QKGQCLKGDR 600 CAFSHGPNPM TGSKVPQAPA TTHGTEPLKK VFGGLQKCTQ ELKVPQASAS KSVGVPPQAK 660 PAPKFQSVPV RNGVSIERNV PSTKALDDEA RRYKATSVPP VSNGDSTSQA NHLLQAHVSD 720 HHGYQNGKDA DEHLRESSPG FDVLVDDELG DSDYYHGEDQ FGRTRGHEGR NLNSVNEYDL 780 DRPADYNSMA DVDRERFCDP RGYDPYDHMQ GQYAWDQHRA SSERQLVGPA RLERRGYRKS 840 DSPENIDELD LRHRLSKHRR VNGLRSIVSH DYALDGHVEE RKNRPRRDSQ QLPSHEGSLS 900 SRLHGRIKLP GGSPPVNGGD LHQEREVDRG RSRGRLSPRR APISSQQGRL RDRIKGRVED 960 YNNEERNFGA HRSRREIMDD RSDDFSRPKR LSDLKGGKDG ENKEQSYLGK RKNVMDNYQQ 1020 SEGDISFEGP KPLSEILKRK REAEAAASGS GKSFVNKQGN NQRESRVSNP GDSEFAVAEV 1080 KSSLPTVAKE EPKYATEDAV GAEDEKTDVA HGQSSQGHNA GELEEGMIDD EPLEDQEPEA 1140 EDQREGDYDY EQGEDGDYNY EEGENADGEE EYMEDEDGDD FAKKIGVMFL

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence

MDYERIQKPQ GGGGFSPGKL RIMLLGVEKK RKEKEDPESK FALRSQPADF DEAGGGGSDN  60
CKDVDVVSVL PECSTSTAAD SVGSEMLSDR RLKDNTSVNS RVRNQEDPSL DYDSGHDALS  120
VSSSIFEFQK AERAPQRVPL APFSKPAPSK WDDAQKWIAS PTWNRPKMGQ AQMQGGQGVG  180
SRKVGNFGYG SRQPTTKVVV EVPDQKVAIF EEPDTKRIDT NQAKMESGGK KFVSWESDPY  240
PIADSYGKPV LMIENSVGES AINLSQHDAS AALHGTTTFI PPPSTARSVS MRDMGTEMTP  300
IASQEPSRTG TPVGATTPIR SPTNSRPSTP GRAAPASSLI DQEANKELSE KELQMKTRRE  360
IMALGTQLGK MNIAAWASKE EDKDASTSLR TVPAEQPGKN VIETRAAAWE EAEKAKYIAR  420
FKREELKIQA WENHQKAKTE ADMRKIEVEV ERIRGRAHSL DKKRQKRRSY FREWGKPPQQ  480
PETTAEEEAL KRNTDCVYFL ASPLTCKKGS ECEYRHSEYA RVNPRDCWYW LNGNCLNLKC  540
AFRHPPLDGL LGSPAATSAG PSLPLSHTVA TPTTPATYNS SKQAVPCIFF QKGQCLKGDR  600
CAFSHGPNPM TGSKVPQAPA TTHGTEPLKK VFGGLQKCTQ ELKVPQASAS KSVGVPPQAK  660
PAPKFQSVPV RNGVSIERNV PSTKALDDEA RRYKATSVPP VSNGDSTSQA NHLLQAHVSD  720
HHGYQNGKDA DEHLRESSPG FDVLVDDELG DSDYYHGEDQ FGRTRGHEGR NLNSVNEYDL  780
DRPADYNSMA DVDRERFCDP RGYDPYDHMQ GQYAWDQHRA SSERQLVGPA RLERRGYRKS  840
DSPENIDELD LRHRLSKHRR VNGLRSIVSH DYALDGHVEE RKNRPRRDSQ QLPSHEGSLS  900
SRLHGRIKLP GGSPPVNGGD LHQEREVDRG RSRGRLSPRR APISSQQGRL RDRIKGRVED  960
YNNEERNFGA HRSRREIMDD RSDDFSRPKR LSDLKGGKDG ENKEQSYLGK RKNVMDNYQQ  1020
SEGDISFEGP KPLSEILKRK REAEAAASGS GKSFVNKQGN NQRESRVSNP GDSEFAVAEV  1080
KSSLPTVAKE EPKYATEDAV GAEDEKTDVA HGQSSQGHNA GELEEGMIDD EPLEDQEPEA  1140
EDQREGDYDY EQGEDGDYNY EEGENADGEE EYMEDEDGDD FAKKIGVMFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	881	888	RKNRPRRD