PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g692380.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 18687.7 Da PI: 10.2561 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.2 | 5.9e-25 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en n+qvtfskRr gi+KKA ELSvLC+aevavi+fs+ gk++ y Pd.00g692380.m01 21 KLENLNNKQVTFSKRRSGIFKKAAELSVLCGAEVAVIVFSTAGKVFCY 68 67999***************************************9877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence |
MVILRKLPKR TQGRKRIEIK KLENLNNKQV TFSKRRSGIF KKAAELSVLC GAEVAVIVFS 60 TAGKVFCYGH PNVETVLECY RSGVAPSAVS DDTAGDQNPN REVEHYLMSL EDVRKKVAAR 120 LHEVRILNGT LTPGALPPVP AVHRLCHMPM MTNGFGAQGG QFGGGYHGFG V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-26 | M-type_MADS family protein |