PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g689370.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GATA | ||||||||
Protein Properties | Length: 355aa MW: 38900.2 Da PI: 4.6611 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2.2e-15 | 196 | 232 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Pd.00g689370.m01 196 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 232 *****99999************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence |
MEMVNAQLLQ ARAYEGEDQL VHIPAELEGD YDEGGGAKAA MNGGDQARRS SGVTMSRCNS 60 ALPSRASELT IAFEGEVHVF PAVTPDKVQA VLLLLGGRDI SSSFPSSESL LESNSGGIGD 120 ISRNSKLSRR TASLVRFREK RKERCFEKKI RYTCRKEVAQ RMYRKNGQFA SLKDDSKIAS 180 GNCDSSDGTS CPESVCQHCG ISEKSTPAMR RGPAGPRSLC NACGLMWANK GTLRDLTKAG 240 RPIHFDQNEL ETAADFKPLM LKPENAHLDP DEEGSPEESK PIALDTENPP LRLGDEDMLE 300 TAEAATNHIS IQMENSTVNF DEQENLDEFC NASGTEFEIP ANFDEQFYEY KPTGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-50 | GATA family protein |