PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g687850.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 510aa MW: 57976.4 Da PI: 10.374

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g687850.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.5e-29	31	115	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdqlea Pd.00g687850.m01 31 RWPRQETLALLQIRSDMDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 115 8******************************************************************975544..6*****85 PP
2	trihelix	105.8	3.1e-33	338	422	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+k+++k+r +e+s+tcpyf+ql+ Pd.00g687850.m01 338 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKDSNKRR-PEDSKTCPYFHQLD 422 8******************************************************************97.99********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLGDSSEDTF RGGGGGDDLL GSGERSFGGN RWPRQETLAL LQIRSDMDVA FRDASVKGPL 60 WDEVSRKLAA LGYHRSAKKC KEKFENVYKY HRRTKEGRTG KSEGKTYRFF DQLEALENQP 120 QTPGTTHHHQ AKPHHQSTMA AVAATMASTI PSSAAPHPII SNVSSQAIAA PTLNLAAPNS 180 FPPTNPIRLM KEVIQKQEDL QKRFLEAIEK REHEKMVREE AWRMQEMARV NRERELLAQE 240 RSIAAAKDAA VMSFLQKISE QQQNPNQTPP PGQSQINNNL LQLQPTQLVP PPPRQPAPLS 300 QPQPQPQSQQ PVTNFELVPK PNNNGENNNL SSPASSSRWP KVEVQALIKL RTSLDSKYQE 360 NGPKGPLWEE ISGAMRKLGY NRSSKRCKEK WENINKYFKK VKDSNKRRPE DSKTCPYFHQ 420 LDSLYRERNK FDHNNVNPKP ENSVPMWQTS QLQWVQPQLS ELRKRPRWIE RKKVGLNVGQ 480 VLQGFRTGHE EEIKGSSTSS SRKQIIDIVN

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLGDSSEDTF RGGGGGDDLL GSGERSFGGN RWPRQETLAL LQIRSDMDVA FRDASVKGPL  60
WDEVSRKLAA LGYHRSAKKC KEKFENVYKY HRRTKEGRTG KSEGKTYRFF DQLEALENQP  120
QTPGTTHHHQ AKPHHQSTMA AVAATMASTI PSSAAPHPII SNVSSQAIAA PTLNLAAPNS  180
FPPTNPIRLM KEVIQKQEDL QKRFLEAIEK REHEKMVREE AWRMQEMARV NRERELLAQE  240
RSIAAAKDAA VMSFLQKISE QQQNPNQTPP PGQSQINNNL LQLQPTQLVP PPPRQPAPLS  300
QPQPQPQSQQ PVTNFELVPK PNNNGENNNL SSPASSSRWP KVEVQALIKL RTSLDSKYQE  360
NGPKGPLWEE ISGAMRKLGY NRSSKRCKEK WENINKYFKK VKDSNKRRPE DSKTCPYFHQ  420
LDSLYRERNK FDHNNVNPKP ENSVPMWQTS QLQWVQPQLS ELRKRPRWIE RKKVGLNVGQ  480
VLQGFRTGHE EEIKGSSTSS SRKQIIDIVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-86	Trihelix family protein