PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g685640.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 430aa    MW: 47081.2 Da    PI: 7.5395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g685640.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-09141161526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C +++r G C++Gd+C FaHg
  Pd.00g685640.m01 141 VCADYRR-GSCSRGDSCEFAHG 161
                       799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    
MTTSVCAEQQ HKFHPSHQLL SSKKSLHNTT IDIPPGKLLT RRTQTQDFTS SSPEMYSPSF  60
STADEALLLK FLPYNAAADD SDEDDANSSD PYSSDHFRMF EFKVRRCTRS RSHDWTNCPF  120
AHPGEKARRR DPRRYHYSGT VCADYRRGSC SRGDSCEFAH GVFECWLHPA RYRTEACKDG  180
KQCKRKVCFF AHTPRQLRVL PIQSSADHTA AALSPTPKKK YGHLSNSVGS PGSNKHCCLF  240
CHSAVTTSSP TSTLLGMSHL SPPLSPAGNH CSSVNGFHNS PVMSRCSGLG LGLDQMHAST  300
AGMMSYKDVL AELMSSLEAV KFSESAAASP INPNAPRWVD VSFNSTDDLD QQQQFILSPS  360
TPSPSRPFGG RGINFSDGDE NGSSRKSSLL GFDDNYYKPN NINDEIINGG GGSGSGSSDP  420
DLGWVNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-82C3H family protein