PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g684450.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 16739.9 Da PI: 4.7786 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.6e-08 | 1 | 16 | 12 | 27 |
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 +G+Ck+G++CkF+H++ Pd.00g684450.m01 1 MGQCKFGATCKFHHPK 16 59************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MGQCKFGATC KFHHPKDILI PSAEQENTFG ETGTTIQPEG TGFAVKPPVS FNPALSFNSK 60 ELLVRPGEPD CPFYLVGSCK AFMRSDNQLE LKFIEKILSA VWTPNQTNAF LYLEKDQESL 120 RDPTTSCHQE PSWDLLMEHQ DRSQLDSW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 4e-21 | C3H family protein |