PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g678260.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 350aa    MW: 39499.8 Da    PI: 7.5584
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g678260.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.2e-21953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  Pd.00g678260.m01  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIVLLMFSPTGK 53
                      689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIVLLMFSP TGKPSLCSGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLTNQ  120
SRLLQTQLSE IKKRLSCWSS PDKITSVEQL GQMEDSVRES LNQIRTHKEN LQKQQLMSLE  180
CTSQFQNGLH IPFSMSAEQQ LQPLSWIPTN ESRHMVLPED PNLLPHRDME CSASSSFGSY  240
SGYLGTGKSS EISTSGQENG ILNDLSRTAP LRLQLGGQFP YLPYNLNMLT DTKFQPPAEM  300
SPQENPVEYH VNGSFEAPRP EFYPTQHSWA STSGPCAVTM FDEHLYSQSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-110M-type_MADS family protein