PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g665120.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 681aa MW: 75290.8 Da PI: 6.8223 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 7.9e-24 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + Pd.00g665120.m01 116 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR-- 204 99****************************9543..445569************************************************4.. PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++el+v+v+r Pd.00g665120.m01 205 GGNGELRVGVRR 216 378899****98 PP | |||||||
2 | Auxin_resp | 103.2 | 3.2e-34 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d+++ +W++SkWrsLk Pd.00g665120.m01 242 ATHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISS-HWSHSKWRSLK 321 689***************6..9**********************************************777.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence |
MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN 60 LPSKILCRVL NINLMAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL 120 TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA 240 TATHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG 300 TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN 360 KRPRPAAEIP ALDATSSTAP ALWNSGLTQS HDMSPPSVAT EGKRSENHAL WHHQQADVIS 420 NNNSISRTQT DGGWLSQTGG SKLMFQDAMD DTKIFSACPV FSGYSTPNSS KLKNDSMCDH 480 VENGKKTETA TSCRIFGIEF INHSARPPSM EKTPLQPISA STGTTEGRVS NSLAAESDQK 540 SDVSKASKES KPGQLQVSSK ETQTKQSCST STRSRTKVQM QGMAVGRAVD LTILEGYGQL 600 IDELEEMFDI KGQIHPGNMW QIVFTDNEGD MMLMGDDPWA EFCDMVKRIF ICSSQDVKKI 660 SAGCKLPLSS LEVEGTVTSS D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 365 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |