PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g657180.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 351aa MW: 39004.9 Da PI: 9.2709

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g657180.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.6	2.4e-30	59	182	3	117
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesssssasnsssg 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + i++l+ ++ ++ +++ ++++s+ ++++s+++ Pd.00g657180.m01 59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTEDDIDKLPPLQVPHGfahqfhQQMlNPHHSHDQGHQSNNS 151 78*************************************************************555553322222225444444444444444 PP TCP 89 ..kaaksaakskksqksaasalnlakesrak 117 +a ++ +s++ ++++++++ +++++r++ Pd.00g657180.m01 152 laAAPFFDVNSSFMEADHQAHQVVHDHQRSS 182 6455555567777777777777777766654 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG 60 KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP 120 LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQVVHDHQR 180 SSTTTNKLFP LGNHPSSIPG LLNNAMAYNY YHNYSEPSSL SLSQFGGHGF PPVPQIDHHS 240 HMMSNALSFS TSMPSGSQLF FCPSTATPSL FGPYPPYITN PVVERGTNTS EPRSQANHFQ 300 FLSSSNSPNL LPNSLMSSLQ SLKSYPTSVN PKQLHSNSQD NNGSQPNKDH N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG  60
KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP  120
LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQVVHDHQR  180
SSTTTNKLFP LGNHPSSIPG LLNNAMAYNY YHNYSEPSSL SLSQFGGHGF PPVPQIDHHS  240
HMMSNALSFS TSMPSGSQLF FCPSTATPSL FGPYPPYITN PVVERGTNTS EPRSQANHFQ  300
FLSSSNSPNL LPNSLMSSLQ SLKSYPTSVN PKQLHSNSQD NNGSQPNKDH N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	4e-49	TCP family protein