PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g639730.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 889aa MW: 98459.6 Da PI: 6.5678 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.5e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Pd.00g639730.m01 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215 99*****************************8544444..48************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Pd.00g639730.m01 216 NEKNQLLLGIRRA 228 899999****997 PP | |||||||
2 | Auxin_resp | 114.3 | 1.1e-37 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv+++ k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Pd.00g639730.m01 253 AAHAAATNSRFTVFYNPRASPSEFVIPLTKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDP-RWPNSHWRSVK 335 79*********************************956689*******************************.********985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence |
MRLSSAGFSP QSQEGEKRVL NSELWHACAG PLVSLPAVAS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDG YLPAGLGNPN 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTVFYNPR ASPSEFVIPL TKYIKAVYHT CISVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSPFPL RLKRPWPPGL PSFHGIRDDD LGMNSQLMWL RGDNGDRGIQ SLNFPGIGVT 420 PYMQPRLDAS MIGLQTDMYQ AMAAAALQEM RAVDPSRPLP TSLLQFQQPQ SLPSRSTALM 480 HPHMVQESQS QQAFLQSVQE NHRQSQPQTQ TQSHLLQQQL QHQNSFSNQQ QLVDHQQIPS 540 AVSAMTQFSS ASQSQSPSLQ VATSLCQQQS FSDSNGNPAT STILSPLHSL MGSFPQDEPS 600 HLLNLPRTNQ LVSSGAWPSK RAAIEPLLSS GVSQCVLPHV EQLGPPQTTI SQNSISLPPF 660 PGRECSIDQE GSTDPQSHLL FGVNIESSSL LMQNGMSNLR GVGSDSDSTT MHFPPNYLST 720 TGTDFSLNPA VTPSSCIDES GFLQSPENVG HGNTLNNNFV KVYKSGSFGR SLDITKFSSY 780 HELRGELARM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPH 840 EVQQMGKRGL DLLKSVPTQR LSNNSCDDYG SRQDSRNLSG ITSVGSLEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |