PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g639390.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 398aa MW: 45841.5 Da PI: 4.6902 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25 | 2.4e-08 | 10 | 49 | 6 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k +r+v+fskRr g++ K + + +ae+ ++++s+ g+ Pd.00g639390.m01 10 KNRRHVSFSKRRSGLFSKGNDFCKKFEAEIGIVVLSEAGR 49 679**********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence |
MEQKEAKLYK NRRHVSFSKR RSGLFSKGND FCKKFEAEIG IVVLSEAGRP YWSPDNPFLD 60 AVLDRFMQSD QAPTNAIDFK VRRQKKEEQD NEVLGQLAEE VKLCRTVKDM FLLRDKYLVL 120 LQDYTNKGMK GSHVLEKGKA KCVSTSPSNL SFEDRIWVEP ISRHKDICSS STLKLDSEHD 180 HRLGNNNGVR GGHDDGWFWD EILKDGYTQG VLMEPISKSE DVLYDSTLNF ESDRNVFDTH 240 HGNINGVEGS SWCKDWEDGK AQCALMQPIS KSEEVLHNST QNLESNRNVF TDQHGNNNDD 300 DETFWDRILE YDKTHQLANS EDVLFNSTPN FECDRLNNIS FWDKILEEGK SECVSFQPIS 360 ESEDFLYNPS LNFESDNRGF DHCQGDNNGG GELCWNYY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-12 | M-type_MADS family protein |