PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g636160.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22244.9 Da PI: 6.6553 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.3 | 5.4e-19 | 4 | 86 | 20 | 97 |
DUF260 20 pyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q+++e++l+ Pd.00g636160.m01 4 QCLqwiedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLFFEAVGRTINPVNGATGLLLSGKWEVCQAAVETVLR 86 55555556999******************************************************************999876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence |
MLRQCLQWIE DPQAQAHATV FVAKFFGRAG LFSFINAVSE SQRPALFQSL FFEAVGRTIN 60 PVNGATGLLL SGKWEVCQAA VETVLRGGTL EPLPEYTRDD HQNCVRDHPI RLQRQSTKKK 120 RSSDLAFDDT DDHDVANCQL PDLDLCLTAA GGLTSRTKRG DCRAGTPSSA EESETTTLGS 180 SSSSADHCSG NNLKGTTKLL RLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-50 | LBD family protein |