PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g628530.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 439aa    MW: 49571.1 Da    PI: 8.4415
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g628530.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06731127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +kt+lC  ++r G C + ++C+FaHg+
  Pd.00g628530.m02  7 FKTKLCVLYQR-GRCAR-ESCSFAHGQ 31
                      69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ARESCSFAHG QAELRRFSGS FDGRRDSGGD DLRDKLERRY  60
SPRRRYSPER DARGRHVLRA EYSPSRSLER ENFEYSFGNS KRRKKQHLDG QSDISGSLRI  120
SNETEHEAKE TNSRGVLEEQ LKQLQSEINM LDHCRSQLGV YLEEKSQEVD SLTSKIKELE  180
AQLYKEKEDC KRISSKVKKF VKAHSRNSRI QDQLKRSQVR LNKLGDQLAL DIYGNDVNEE  240
DSSINIVSDG DGETTGFPVT PHNERLNDAS PSKIRLEAIR DNAKESKQSA HSTRGHLTTS  300
SRPKKLSRWN IHPAQSNFDK KNEAVSNAIG SPKQLANEGK HDRRKTASSS ILSADMLKIS  360
ESAPVVPSTS MAAHPVDTEV EIEPEDKIEM VGKASGKIEE GAAYENVSFS LPLPPPPIPK  420
NNYSQYEGDD EIIDVQGAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-40C3H family protein